Variant report

Variant	rs10913896
Chromosome Location	chr1:171837867-171837868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:171832502..171835354-chr1:171836548..171838388,2	K562	blood:

Variant related genes	Relation type
ENSG00000233540	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10913843	1.00[AFR][1000 genomes]
rs10913898	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10913953	0.90[AFR][1000 genomes]
rs12064937	1.00[YRI][hapmap]
rs12065857	0.90[AFR][1000 genomes]
rs12087423	0.90[AFR][1000 genomes]
rs12087804	1.00[LWK][hapmap]
rs12089309	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12093397	1.00[AFR][1000 genomes]
rs12093518	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs28411002	1.00[AFR][1000 genomes]
rs7527401	1.00[AFR][1000 genomes]
rs7548871	1.00[YRI][hapmap]
rs7554281	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv831893	chr1:171802450-171985000	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171828400-171850800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:171833200-171838200	Weak transcription	NHEK	skin
3	chr1:171833800-171838200	Weak transcription	Brain Substantia Nigra	brain
4	chr1:171833800-171838600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:171836400-171838400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:171837200-171838600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:171837200-171838600	Enhancers	HMEC	breast
8	chr1:171837200-171838800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:171837200-171838800	Enhancers	Brain Cingulate Gyrus	brain
10	chr1:171837200-171839000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr1:171837200-171839400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:171837200-171840000	Enhancers	Brain Hippocampus Middle	brain
13	chr1:171837200-171841800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr1:171837400-171838600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:171837600-171838000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr1:171837600-171838000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr1:171837800-171838200	Weak transcription	Brain Angular Gyrus	brain
18	chr1:171837800-171838200	Weak transcription	Brain Anterior Caudate	brain
19	chr1:171837800-171838400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:171837800-171838800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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