Variant report

Variant	rs10913898
Chromosome Location	chr1:171839513-171839514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10913843	1.00[AFR][1000 genomes]
rs10913896	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10913953	0.90[AFR][1000 genomes]
rs12062177	0.85[YRI][hapmap]
rs12064937	1.00[YRI][hapmap]
rs12065857	0.90[AFR][1000 genomes]
rs12087423	0.90[AFR][1000 genomes]
rs12087573	0.85[YRI][hapmap]
rs12089309	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12093397	1.00[AFR][1000 genomes]
rs12093518	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs28411002	1.00[AFR][1000 genomes]
rs7527401	1.00[AFR][1000 genomes]
rs7535018	0.85[YRI][hapmap]
rs7554281	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv831893	chr1:171802450-171985000	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171828400-171850800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:171837200-171840000	Enhancers	Brain Hippocampus Middle	brain
3	chr1:171837200-171841800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr1:171838200-171840200	Enhancers	Brain Angular Gyrus	brain
5	chr1:171838600-171840600	Weak transcription	Brain Substantia Nigra	brain
6	chr1:171838800-171839800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:171838800-171848200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:171839000-171839800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:171839000-171840000	Weak transcription	Brain Anterior Caudate	brain
10	chr1:171839000-171844400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:171839200-171840000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:171839400-171840400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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