Variant report

Variant	rs10917746
Chromosome Location	chr1:161682441-161682442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161681483..161683417-chr9:111377943..111379787,2	MCF-7	breast:
2	chr1:161680752..161683037-chr1:161694761..161697715,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162746	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494356	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10917753	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10917754	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10917809	0.81[ASN][1000 genomes]
rs12048671	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs12567036	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16858529	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16858733	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs1954174	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2050887	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4468140	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.84[LWK][hapmap];0.85[MKK][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56270452	1.00[EUR][1000 genomes]
rs6427620	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6697814	0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67476681	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72704099	0.87[ASN][1000 genomes]
rs7525788	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs7549830	0.81[CHD][hapmap]
rs7549967	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs905592	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv1822760	chr1:161480943-161687379	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv464184	chr1:161646807-161885352	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv548075	chr1:161646807-161885352	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161676200-161692000	Weak transcription	Spleen	Spleen
2	chr1:161680000-161682600	Enhancers	K562	blood
3	chr1:161680400-161683600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:161681400-161683000	Genic enhancers	GM12878-XiMat	blood
5	chr1:161682000-161683800	Strong transcription	Primary B cells from cord blood	blood
6	chr1:161682000-161684200	Strong transcription	Primary B cells from peripheral blood	blood
7	chr1:161682200-161683400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:161682400-161682800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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