Variant report

Variant	rs1954174
Chromosome Location	chr1:161677807-161677808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10494356	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[ASN][1000 genomes]
rs10917746	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10917753	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[ASN][1000 genomes]
rs10917754	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[ASN][1000 genomes]
rs12048671	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.83[ASN][1000 genomes]
rs12567036	0.95[ASN][1000 genomes]
rs16858529	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[ASN][1000 genomes]
rs2050887	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.96[ASN][1000 genomes]
rs4468140	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.96[ASN][1000 genomes]
rs56270452	0.81[EUR][1000 genomes]
rs6427620	0.96[ASN][1000 genomes]
rs6697814	0.96[ASN][1000 genomes]
rs67476681	0.93[ASN][1000 genomes]
rs72704099	0.85[ASN][1000 genomes]
rs7525788	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs7549830	0.86[CHD][hapmap]
rs7549967	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[ASN][1000 genomes]
rs905592	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756866	chr1:161344255-161681552	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	esv2758972	chr1:161344255-161681552	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
3	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	esv2755678	chr1:161463498-161678377	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	esv1822760	chr1:161480943-161687379	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	esv1817508	chr1:161483404-161678548	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv464184	chr1:161646807-161885352	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv548075	chr1:161646807-161885352	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1954174	FCRLA	cis	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161675400-161678200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:161675400-161678400	Enhancers	NHDF-Ad	bronchial
3	chr1:161675800-161680600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:161676000-161679800	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr1:161676200-161692000	Weak transcription	Spleen	Spleen
6	chr1:161676600-161678600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:161676800-161679600	Active TSS	GM12878-XiMat	blood
8	chr1:161676800-161679800	Weak transcription	Right Atrium	heart
9	chr1:161677000-161678000	Enhancers	Osteobl	bone
10	chr1:161677000-161679200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:161677200-161678000	Enhancers	HSMMtube	muscle
12	chr1:161677200-161679400	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:161677600-161679400	Weak transcription	K562	blood
14	chr1:161677600-161680000	Flanking Active TSS	Primary B cells from peripheral blood	blood
15	chr1:161677800-161678000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:161677800-161682400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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