Variant report

Variant	rs10918234
Chromosome Location	chr1:165628652-165628653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165618685..165622875-chr1:165623936..165629160,4	K562	blood:
2	chr1:165624974..165629115-chr1:165629566..165633277,5	K562	blood:

Variant related genes	Relation type
ENSG00000206990	Chromatin interaction
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1577847	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348730	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6426927	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6426928	0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6426930	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6667681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6668102	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690818	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511691	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516126	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518869	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533986	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534359	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544840	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551594	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553712	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554409	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165603800-165631200	Weak transcription	Fetal Kidney	kidney
2	chr1:165604800-165632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:165605200-165628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:165610600-165630800	Weak transcription	Small Intestine	intestine
6	chr1:165615400-165630000	Weak transcription	GM12878-XiMat	blood
7	chr1:165615600-165629600	Weak transcription	Primary B cells from cord blood	blood
8	chr1:165615600-165630200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:165615600-165631000	Weak transcription	NHEK	skin
10	chr1:165615800-165631000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:165616400-165630200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:165616400-165632000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:165617000-165630000	Weak transcription	Thymus	Thymus
14	chr1:165617000-165631200	Strong transcription	Fetal Stomach	stomach
15	chr1:165618000-165631000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:165618000-165638600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr1:165618200-165652400	Strong transcription	Fetal Muscle Leg	muscle
18	chr1:165618600-165634800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr1:165618800-165630800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:165618800-165638600	Strong transcription	Fetal Intestine Large	intestine
21	chr1:165619000-165635000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:165619000-165642600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:165619000-165643600	Strong transcription	Fetal Muscle Trunk	muscle
24	chr1:165619200-165630800	Strong transcription	NHDF-Ad	bronchial
25	chr1:165619200-165634200	Strong transcription	Stomach Smooth Muscle	stomach
26	chr1:165619200-165648800	Strong transcription	Liver	Liver
27	chr1:165619400-165636200	Strong transcription	Adipose Nuclei	Adipose
28	chr1:165619600-165642600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:165619600-165653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr1:165620400-165628800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr1:165620800-165631000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr1:165620800-165631200	Weak transcription	HepG2	liver
33	chr1:165621000-165630800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:165621000-165634400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:165621200-165628800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr1:165621600-165632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr1:165622600-165630600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr1:165622800-165631200	Weak transcription	A549	lung
39	chr1:165623200-165628800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr1:165623200-165629200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr1:165623400-165629600	Weak transcription	Esophagus	oesophagus
42	chr1:165623400-165630000	Weak transcription	Fetal Thymus	thymus
43	chr1:165623400-165653000	Weak transcription	Stomach Mucosa	stomach
44	chr1:165623600-165628800	Weak transcription	HSMM	muscle
45	chr1:165623600-165629800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr1:165623600-165630000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr1:165623800-165628800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr1:165623800-165629200	Weak transcription	Gastric	stomach
49	chr1:165623800-165631200	Weak transcription	K562	blood
50	chr1:165623800-165631800	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links