The 2.0 version of rSNPBase

Variant report

Variant rs7553712
Chromosome Location chr1:165629667-165629668
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165603800-165631200 Weak transcription Fetal Kidney kidney
2 chr1:165604800-165632200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:165606200-165659600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:165610600-165630800 Weak transcription Small Intestine intestine
5 chr1:165615400-165630000 Weak transcription GM12878-XiMat blood
6 chr1:165615600-165630200 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr1:165615600-165631000 Weak transcription NHEK skin
8 chr1:165615800-165631000 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:165616400-165630200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr1:165616400-165632000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr1:165617000-165630000 Weak transcription Thymus Thymus
12 chr1:165617000-165631200 Strong transcription Fetal Stomach stomach
13 chr1:165618000-165631000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:165618000-165638600 Strong transcription Cortex derived primary cultured neurospheres brain
15 chr1:165618200-165652400 Strong transcription Fetal Muscle Leg muscle
16 chr1:165618600-165634800 Strong transcription Monocytes-CD14+_RO01746 blood
17 chr1:165618800-165630800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr1:165618800-165638600 Strong transcription Fetal Intestine Large intestine
19 chr1:165619000-165635000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr1:165619000-165642600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:165619000-165643600 Strong transcription Fetal Muscle Trunk muscle
22 chr1:165619200-165630800 Strong transcription NHDF-Ad bronchial
23 chr1:165619200-165634200 Strong transcription Stomach Smooth Muscle stomach
24 chr1:165619200-165648800 Strong transcription Liver Liver
25 chr1:165619400-165636200 Strong transcription Adipose Nuclei Adipose
26 chr1:165619600-165642600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:165619600-165653200 Strong transcription Breast Myoepithelial Primary Cells Breast
28 chr1:165620800-165631000 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr1:165620800-165631200 Weak transcription HepG2 liver
30 chr1:165621000-165630800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr1:165621000-165634400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr1:165621600-165632200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr1:165622600-165630600 Strong transcription Fetal Adrenal Gland Adrenal Gland
34 chr1:165622800-165631200 Weak transcription A549 lung
35 chr1:165623400-165630000 Weak transcription Fetal Thymus thymus
36 chr1:165623400-165653000 Weak transcription Stomach Mucosa stomach
37 chr1:165623600-165629800 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr1:165623600-165630000 Weak transcription Primary B cells from peripheral blood blood
39 chr1:165623800-165631200 Weak transcription K562 blood
40 chr1:165623800-165631800 Weak transcription HUVEC blood vessel
41 chr1:165623800-165636400 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr1:165624400-165630800 Weak transcription Primary T killer memory cells from peripheral blood blood
43 chr1:165624600-165632800 Weak transcription Colonic Mucosa Colon
44 chr1:165624800-165631000 Weak transcription Hela-S3 cervix
45 chr1:165625000-165632200 Weak transcription Brain Angular Gyrus brain
46 chr1:165625200-165630000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr1:165625600-165631000 Weak transcription NH-A brain
48 chr1:165625600-165631800 Weak transcription Fetal Brain Male brain
49 chr1:165626000-165630200 Weak transcription Rectal Smooth Muscle rectum
50 chr1:165626200-165630600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015