Variant report

Variant	rs10918562
Chromosome Location	chr1:166662462-166662463
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10918560	1.00[AMR][1000 genomes]
rs10918561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10918563	1.00[AMR][1000 genomes]
rs10918564	1.00[AMR][1000 genomes]
rs12062892	1.00[AMR][1000 genomes]
rs12062947	1.00[AMR][1000 genomes]
rs12075311	1.00[AMR][1000 genomes]
rs12076285	1.00[AMR][1000 genomes]
rs12079006	1.00[AMR][1000 genomes]
rs12079870	1.00[AMR][1000 genomes]
rs12081109	1.00[AMR][1000 genomes]
rs12082540	1.00[AMR][1000 genomes]
rs12082576	1.00[AMR][1000 genomes]
rs12082621	1.00[AMR][1000 genomes]
rs12088619	1.00[AMR][1000 genomes]
rs12090361	1.00[AMR][1000 genomes]
rs12093229	1.00[AMR][1000 genomes]
rs6672290	1.00[AMR][1000 genomes]
rs6675197	1.00[AMR][1000 genomes]
rs6696589	1.00[AMR][1000 genomes]
rs6696827	1.00[AMR][1000 genomes]
rs6699359	1.00[AMR][1000 genomes]
rs6700239	1.00[AMR][1000 genomes]
rs7523387	1.00[AMR][1000 genomes]
rs7524463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7524464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7524545	1.00[AMR][1000 genomes]
rs7524856	1.00[AMR][1000 genomes]
rs7533794	1.00[AMR][1000 genomes]
rs7534259	1.00[AMR][1000 genomes]
rs7536310	1.00[AMR][1000 genomes]
rs7556493	1.00[AMR][1000 genomes]
rs7556566	1.00[AMR][1000 genomes]
rs9943189	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv2752389	chr1:166625342-166706342	Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv947550	chr1:166647096-166673303	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166660400-166665200	Enhancers	K562	blood
2	chr1:166662000-166662600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:166662000-166663000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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