Variant report

Variant	rs6696827
Chromosome Location	chr1:166648249-166648250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166646941..166649899-chr1:166808639..166811427,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143157	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10918560	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10918561	1.00[AMR][1000 genomes]
rs10918562	1.00[AMR][1000 genomes]
rs10918563	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10918564	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062892	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062947	1.00[AMR][1000 genomes]
rs12075311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076285	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079006	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079870	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12081109	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082540	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082576	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082621	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088619	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090361	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093229	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6672290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6675197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6684716	1.00[AFR][1000 genomes]
rs6696589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6699359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6700239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7524463	1.00[AMR][1000 genomes]
rs7524464	1.00[AMR][1000 genomes]
rs7524545	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7524856	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7533794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7534259	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7536310	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7556493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7556566	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9943189	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv2757759	chr1:166491879-166650985	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758975	chr1:166491879-166650985	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2752389	chr1:166625342-166706342	Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv947550	chr1:166647096-166673303	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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