Variant report

Variant	rs10919093
Chromosome Location	chr1:169168804-169168805
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1018832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10458388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10458394	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10489417	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10800433	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10919062	0.85[ASN][1000 genomes]
rs10919070	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10919071	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10919074	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10919085	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10919087	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10919125	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10919127	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10919128	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12021696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12025566	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12028197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12029800	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12029857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12030541	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12030810	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12031371	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12035622	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12036426	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12042082	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12045803	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12048188	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12401966	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12403181	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12406341	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12408636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12410241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12410387	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12410456	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12410548	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568473	0.85[ASN][1000 genomes]
rs17345156	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2000321	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2001155	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2001156	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2143290	0.85[ASN][1000 genomes]
rs34323371	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3766074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4497270	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4562680	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72706963	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72706975	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7528142	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7556463	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10919093	NME7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169130400-169195200	Weak transcription	Pancreas	Pancrea
2	chr1:169163600-169184000	Weak transcription	Ovary	ovary
3	chr1:169165800-169169400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:169167200-169176400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:169167800-169186800	Weak transcription	Primary T cells from cord blood	blood
6	chr1:169168000-169183800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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