Variant report

Variant	rs10919429
Chromosome Location	chr1:170524634-170524635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:170524609..170527815-chr1:170530130..170532352,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10753815	0.83[ASW][hapmap]
rs10800527	0.91[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs12068399	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12072089	0.85[AFR][1000 genomes]
rs1333133	0.83[ASW][hapmap]
rs1333150	1.00[AMR][1000 genomes]
rs1412892	1.00[AMR][1000 genomes]
rs1412893	1.00[AMR][1000 genomes]
rs1537397	0.83[ASW][hapmap]
rs16863435	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2150029	0.83[ASW][hapmap]
rs2225322	0.83[ASW][hapmap]
rs2421325	0.91[ASW][hapmap];1.00[AMR][1000 genomes]
rs3980839	1.00[AMR][1000 genomes]
rs57462154	0.83[AFR][1000 genomes]
rs57674813	0.82[AFR][1000 genomes]
rs6427260	0.91[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6427261	0.91[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6664037	1.00[AMR][1000 genomes]
rs6667304	1.00[AMR][1000 genomes]
rs6669308	0.91[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6671312	1.00[AMR][1000 genomes]
rs6693763	0.91[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6701218	1.00[AMR][1000 genomes]
rs7523665	1.00[AMR][1000 genomes]
rs7531125	0.83[ASW][hapmap]
rs7553254	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170505000-170524800	Strong transcription	Dnd41	blood
2	chr1:170512600-170527200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:170514000-170532000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:170514400-170526800	Weak transcription	Psoas Muscle	Psoas
5	chr1:170514400-170532000	Weak transcription	Small Intestine	intestine
6	chr1:170516800-170526400	Weak transcription	Spleen	Spleen
7	chr1:170517400-170525000	Weak transcription	Fetal Intestine Small	intestine
8	chr1:170517400-170525800	Weak transcription	NHEK	skin
9	chr1:170517400-170527600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:170517400-170531800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:170517600-170525600	Weak transcription	Pancreas	Pancrea
12	chr1:170519600-170526000	Weak transcription	Gastric	stomach
13	chr1:170519600-170526400	Weak transcription	Esophagus	oesophagus
14	chr1:170519600-170529200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:170519600-170531400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr1:170521600-170524800	Weak transcription	Fetal Heart	heart
17	chr1:170521600-170524800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:170521600-170525200	Weak transcription	Fetal Kidney	kidney
19	chr1:170521600-170525200	Weak transcription	Thymus	Thymus
20	chr1:170521600-170525400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:170521600-170525600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:170521600-170525800	Weak transcription	Right Ventricle	heart
23	chr1:170521600-170526200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:170521600-170526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:170521600-170527000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:170521600-170527400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr1:170521600-170527600	Weak transcription	Aorta	Aorta
28	chr1:170521600-170531400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:170521600-170531600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:170521600-170531600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:170521600-170531600	Weak transcription	Left Ventricle	heart
32	chr1:170521600-170531800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:170521600-170532000	Weak transcription	HepG2	liver
34	chr1:170521600-170532600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr1:170521800-170525800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr1:170521800-170525800	Weak transcription	HSMMtube	muscle
37	chr1:170521800-170526200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr1:170521800-170526200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr1:170521800-170526200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr1:170521800-170528000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr1:170521800-170531800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr1:170522000-170529200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr1:170522000-170531400	Weak transcription	HUVEC	blood vessel
44	chr1:170522000-170531600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr1:170522000-170531600	Weak transcription	Placenta	Placenta
46	chr1:170522000-170531800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr1:170522000-170531800	Weak transcription	Colon Smooth Muscle	Colon
48	chr1:170522000-170532000	Weak transcription	Brain Hippocampus Middle	brain
49	chr1:170522200-170525000	Weak transcription	Fetal Thymus	thymus
50	chr1:170522200-170525400	Weak transcription	Duodenum Mucosa	Duodenum

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