Variant report

Variant	rs12072089
Chromosome Location	chr1:170539374-170539375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10733056	1.00[AMR][1000 genomes]
rs10753814	1.00[AMR][1000 genomes]
rs10753815	0.81[ASW][hapmap];1.00[AMR][1000 genomes]
rs10800527	0.90[ASW][hapmap]
rs10919425	1.00[AMR][1000 genomes]
rs10919429	0.85[AFR][1000 genomes]
rs10919434	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062348	1.00[AMR][1000 genomes]
rs12068399	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs12087798	1.00[AMR][1000 genomes]
rs12088253	1.00[AMR][1000 genomes]
rs12116909	1.00[AMR][1000 genomes]
rs1333133	0.81[ASW][hapmap];1.00[AMR][1000 genomes]
rs1333156	1.00[AMR][1000 genomes]
rs1412895	1.00[AMR][1000 genomes]
rs1537397	0.81[ASW][hapmap];1.00[AMR][1000 genomes]
rs1576980	1.00[AMR][1000 genomes]
rs16863435	1.00[ASW][hapmap];0.88[LWK][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs1855221	1.00[AMR][1000 genomes]
rs2104918	1.00[AMR][1000 genomes]
rs2150029	0.81[ASW][hapmap];1.00[AMR][1000 genomes]
rs2225322	0.81[ASW][hapmap];1.00[AMR][1000 genomes]
rs2421325	0.90[ASW][hapmap]
rs2901401	1.00[AMR][1000 genomes]
rs4233350	1.00[AMR][1000 genomes]
rs4656769	1.00[AMR][1000 genomes]
rs4656775	1.00[AMR][1000 genomes]
rs4656777	1.00[AMR][1000 genomes]
rs4656779	1.00[AMR][1000 genomes]
rs57462154	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57674813	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6427260	0.90[ASW][hapmap]
rs6427261	0.90[ASW][hapmap]
rs6657164	1.00[AMR][1000 genomes]
rs6660575	1.00[AMR][1000 genomes]
rs6669308	0.90[ASW][hapmap]
rs6676081	1.00[AMR][1000 genomes]
rs6680083	1.00[AMR][1000 genomes]
rs6693763	0.90[ASW][hapmap]
rs6703801	1.00[AMR][1000 genomes]
rs7531125	0.81[ASW][hapmap];1.00[AMR][1000 genomes]
rs7538125	1.00[AMR][1000 genomes]
rs7548443	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170537800-170549800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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