Variant report

Variant	rs6680083
Chromosome Location	chr1:170383989-170383990
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10733056	1.00[AMR][1000 genomes]
rs10753814	1.00[AMR][1000 genomes]
rs10753815	1.00[AMR][1000 genomes]
rs10919425	1.00[AMR][1000 genomes]
rs10919434	1.00[AMR][1000 genomes]
rs12062348	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12072089	1.00[AMR][1000 genomes]
rs12087798	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088253	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12116909	1.00[AMR][1000 genomes]
rs1333133	1.00[AMR][1000 genomes]
rs1333156	1.00[AMR][1000 genomes]
rs1412895	1.00[AMR][1000 genomes]
rs1537397	1.00[AMR][1000 genomes]
rs1576980	1.00[AMR][1000 genomes]
rs1855221	1.00[AMR][1000 genomes]
rs2104918	1.00[AMR][1000 genomes]
rs2150029	1.00[AMR][1000 genomes]
rs2225322	1.00[AMR][1000 genomes]
rs2901401	1.00[AMR][1000 genomes]
rs4233350	1.00[AMR][1000 genomes]
rs4656769	1.00[AMR][1000 genomes]
rs4656775	1.00[AMR][1000 genomes]
rs4656777	1.00[AMR][1000 genomes]
rs4656779	1.00[AMR][1000 genomes]
rs57462154	1.00[AMR][1000 genomes]
rs57674813	1.00[AMR][1000 genomes]
rs6657164	1.00[AMR][1000 genomes]
rs6660575	1.00[AMR][1000 genomes]
rs6676081	1.00[AMR][1000 genomes]
rs6703801	1.00[AMR][1000 genomes]
rs7531125	1.00[AMR][1000 genomes]
rs7538125	1.00[AMR][1000 genomes]
rs7548443	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv2756870	chr1:170315081-170413292	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv2758977	chr1:170315081-170413292	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1012584	chr1:170367098-170387193	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv1002109	chr1:170367098-170387331	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv441720	chr1:170367646-170387205	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv1010414	chr1:170367650-170387193	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv2764177	chr1:170367650-170387331	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv1004916	chr1:170367650-170387331	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv1000945	chr1:170367650-170401770	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv514018	chr1:170367664-170386144	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv1000840	chr1:170367736-170387193	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv1000663	chr1:170370782-170387193	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv1000790	chr1:170370782-170387331	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170376000-170385800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:170380200-170384600	Weak transcription	Ovary	ovary
3	chr1:170380400-170384000	Weak transcription	Fetal Heart	heart
4	chr1:170380600-170384000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:170380600-170384400	Weak transcription	HSMM	muscle
6	chr1:170381200-170389200	Weak transcription	Fetal Stomach	stomach
7	chr1:170383400-170384400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:170383400-170385400	Enhancers	NHLF	lung
9	chr1:170383400-170385800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:170383600-170384000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:170383800-170384000	Enhancers	Small Intestine	intestine
12	chr1:170383800-170384800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr1:170383800-170385600	Enhancers	NHDF-Ad	bronchial
14	chr1:170383800-170385600	Enhancers	Osteobl	bone
15	chr1:170383800-170385800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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