Variant report
Variant | rs10921069 |
---|---|
Chromosome Location | chr1:192016798-192016799 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:192010337..192012838-chr1:192014491..192017057,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10754002 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10921064 | 0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10921070 | 0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10921071 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10921072 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11799436 | 0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12027699 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12040845 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12121382 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12402161 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12738909 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12739091 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12760188 | 0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1832705 | 0.84[ASN][1000 genomes] |
rs2999581 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2999582 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2999585 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2999586 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2999587 | 0.81[EUR][1000 genomes] |
rs4443869 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4657772 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4657779 | 0.92[ASN][1000 genomes] |
rs4657922 | 0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs61819040 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6655932 | 0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6669977 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6695560 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7349065 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7367454 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7416831 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7418526 | 0.84[ASN][1000 genomes] |
rs9427553 | 0.82[EUR][1000 genomes] |
rs9427815 | 0.84[ASN][1000 genomes] |
rs9427816 | 0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs946962 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1007060 | chr1:191577303-192141825 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv430047 | chr1:191811587-192203678 | Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv872826 | chr1:191868441-192074894 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv470765 | chr1:191924244-192017623 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
5 | nsv872827 | chr1:191928253-192033140 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
6 | nsv832137 | chr1:191931044-192069133 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
7 | nsv548644 | chr1:191953675-192016893 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
8 | esv1847596 | chr1:191953675-192017623 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
9 | nsv548645 | chr1:191953675-192040576 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
10 | nsv548646 | chr1:191955405-192040576 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
11 | nsv548647 | chr1:191962527-192040576 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
12 | nsv872828 | chr1:191975137-192074894 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
13 | nsv548648 | chr1:192001465-192096277 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:192014800-192020200 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |