Variant report

Variant	rs9427815
Chromosome Location	chr1:191953524-191953525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10754002	0.82[ASN][1000 genomes]
rs10921064	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10921069	0.84[ASN][1000 genomes]
rs10921070	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10921071	0.82[ASN][1000 genomes]
rs10921072	0.82[ASN][1000 genomes]
rs11799436	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12027699	0.82[ASN][1000 genomes]
rs12040845	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12064769	0.83[EUR][1000 genomes]
rs12121382	0.82[ASN][1000 genomes]
rs12141491	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12402161	0.81[ASN][1000 genomes]
rs12562398	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12568027	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12738909	0.82[ASN][1000 genomes]
rs12739091	0.82[ASN][1000 genomes]
rs12760188	0.83[ASN][1000 genomes]
rs1832705	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2999581	0.82[ASN][1000 genomes]
rs2999582	0.83[ASN][1000 genomes]
rs2999586	0.83[ASN][1000 genomes]
rs4443869	0.82[ASN][1000 genomes]
rs4657772	0.81[ASN][1000 genomes]
rs61819040	0.84[ASN][1000 genomes]
rs6655932	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6669977	0.82[ASN][1000 genomes]
rs6672642	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6695560	0.82[ASN][1000 genomes]
rs7349065	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7367454	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7416831	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7418526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9427553	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9427816	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs946962	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007060	chr1:191577303-192141825	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv428279	chr1:191689246-192014612	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv548610	chr1:191805526-191953675	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv430047	chr1:191811587-192203678	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv872825	chr1:191868441-191975137	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv872826	chr1:191868441-192074894	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv1812983	chr1:191917000-191953675	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv470765	chr1:191924244-192017623	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv872827	chr1:191928253-192033140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv832137	chr1:191931044-192069133	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:191953000-191954400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:191953200-191957200	Weak transcription	Gastric	stomach

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