Variant report

Variant	rs10921208
Chromosome Location	chr1:192580570-192580571
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10429907	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489875	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10489876	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10733072	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10754020	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10754021	0.99[ASN][1000 genomes]
rs10801133	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10801135	0.90[EUR][1000 genomes]
rs10921209	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10921210	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10921212	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10921214	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12042137	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12057462	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12057515	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12062810	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12067683	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12404054	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12406259	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12406267	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12406286	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12407137	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12410766	0.86[EUR][1000 genomes]
rs12564890	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12751549	0.87[EUR][1000 genomes]
rs1323290	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1407819	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1977258	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3011686	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4130930	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4317788	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4319307	0.86[ASN][1000 genomes]
rs4338336	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4453020	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4465185	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58418234	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6428113	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6428115	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6428116	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6428117	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6428118	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6428119	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6658355	0.95[EUR][1000 genomes]
rs6658458	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6661375	0.93[EUR][1000 genomes]
rs6661461	0.93[EUR][1000 genomes]
rs6661679	0.94[EUR][1000 genomes]
rs6682373	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6694759	0.96[EUR][1000 genomes]
rs7512614	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7538087	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7539601	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7539860	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7544573	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7544670	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7544767	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7554685	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv467005	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548659	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192575000-192583800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:192579600-192580800	Flanking Active TSS	Dnd41	blood
3	chr1:192579800-192581200	Enhancers	Fetal Intestine Small	intestine
4	chr1:192580000-192582000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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