Variant report

Variant	rs10921232
Chromosome Location	chr1:192640236-192640237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10754022	0.87[ASN][1000 genomes]
rs10754023	0.87[ASN][1000 genomes]
rs10801140	0.87[ASN][1000 genomes]
rs10921233	0.87[ASN][1000 genomes]
rs10921234	0.87[ASN][1000 genomes]
rs10921237	0.84[ASN][1000 genomes]
rs10921238	0.85[ASN][1000 genomes]
rs11576197	0.81[ASN][1000 genomes]
rs12037932	0.85[ASN][1000 genomes]
rs12042114	0.87[ASN][1000 genomes]
rs12403636	0.85[ASN][1000 genomes]
rs1933705	0.85[ASN][1000 genomes]
rs1933706	0.85[ASN][1000 genomes]
rs1933712	0.87[ASN][1000 genomes]
rs1933713	0.85[ASN][1000 genomes]
rs1933714	0.85[ASN][1000 genomes]
rs1933715	0.87[ASN][1000 genomes]
rs2104248	0.84[ASN][1000 genomes]
rs2146607	0.85[ASN][1000 genomes]
rs2181445	0.87[ASN][1000 genomes]
rs2208960	0.85[ASN][1000 genomes]
rs2369892	0.83[ASN][1000 genomes]
rs6695451	0.83[ASN][1000 genomes]
rs7549322	0.80[ASN][1000 genomes]
rs961480	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192638200-192644000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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