Variant report

Variant	rs10801140
Chromosome Location	chr1:192650409-192650410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10754022	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10754023	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921229	0.89[CEU][hapmap]
rs10921232	0.87[ASN][1000 genomes]
rs10921233	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921234	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921236	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10921237	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10921238	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11576197	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12037932	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12042114	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118386	0.92[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs12403636	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12734103	0.84[AFR][1000 genomes]
rs12749077	0.84[AFR][1000 genomes]
rs12755754	0.86[YRI][hapmap]
rs1933703	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1933704	0.89[YRI][hapmap]
rs1933705	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933706	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933709	0.81[EUR][1000 genomes]
rs1933711	0.86[EUR][1000 genomes]
rs1933712	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933713	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933714	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933715	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2146607	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2146609	0.81[LWK][hapmap];0.96[YRI][hapmap]
rs2181445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2208960	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2296020	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs2296021	0.85[CEU][hapmap];0.81[GIH][hapmap]
rs2369892	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34208957	0.84[AFR][1000 genomes]
rs34494529	0.84[AFR][1000 genomes]
rs34725057	0.84[AFR][1000 genomes]
rs35164338	0.83[AFR][1000 genomes]
rs35234624	0.89[YRI][hapmap]
rs35511097	0.84[AFR][1000 genomes]
rs35556099	0.84[AFR][1000 genomes]
rs35557412	0.83[AFR][1000 genomes]
rs35679411	0.82[AFR][1000 genomes]
rs35918607	0.84[AFR][1000 genomes]
rs4995860	0.82[AFR][1000 genomes]
rs4995861	0.80[AFR][1000 genomes]
rs6695451	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6699054	0.89[EUR][1000 genomes]
rs6702192	0.98[EUR][1000 genomes]
rs71639163	0.83[AFR][1000 genomes]
rs7540755	0.86[EUR][1000 genomes]
rs7549322	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9287126	0.85[CEU][hapmap];0.81[GIH][hapmap]
rs961480	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10801140	RGS21	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192649600-192650800	Weak transcription	Colon Smooth Muscle	Colon

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