Variant report

Variant	rs10921236
Chromosome Location	chr1:192657666-192657667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10754022	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10754023	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10801140	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10921233	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10921234	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10921237	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10921238	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11576197	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12037932	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12042114	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12734103	0.81[AFR][1000 genomes]
rs12749077	0.81[AFR][1000 genomes]
rs1933703	0.80[AFR][1000 genomes]
rs1933705	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1933706	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1933712	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1933713	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1933714	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1933715	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2104248	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2146607	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2181445	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2208960	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2369892	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34208957	0.82[AFR][1000 genomes]
rs34494529	0.82[AFR][1000 genomes]
rs34725057	0.82[AFR][1000 genomes]
rs35164338	0.82[AFR][1000 genomes]
rs35511097	0.81[AFR][1000 genomes]
rs35556099	0.82[AFR][1000 genomes]
rs35557412	0.80[AFR][1000 genomes]
rs35918607	0.82[AFR][1000 genomes]
rs6695451	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6699054	0.81[EUR][1000 genomes]
rs6702192	0.89[EUR][1000 genomes]
rs71639163	0.80[AFR][1000 genomes]
rs7549322	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs961480	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192657400-192659200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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