Variant report
| Variant | rs1933709 |
|---|---|
| Chromosome Location | chr1:192638215-192638216 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10489519 | 0.87[EUR][1000 genomes] |
| rs10801140 | 0.81[EUR][1000 genomes] |
| rs10921229 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10921234 | 0.81[EUR][1000 genomes] |
| rs10921238 | 0.81[EUR][1000 genomes] |
| rs10921239 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12118386 | 1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1933705 | 0.81[EUR][1000 genomes] |
| rs1933706 | 0.81[EUR][1000 genomes] |
| rs1933711 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2146607 | 0.81[EUR][1000 genomes] |
| rs2181445 | 0.81[EUR][1000 genomes] |
| rs2296020 | 0.85[CEU][hapmap] |
| rs2296021 | 0.89[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes] |
| rs4568808 | 0.85[CHB][hapmap] |
| rs4601565 | 0.85[CHB][hapmap] |
| rs6699054 | 0.89[ASN][1000 genomes] |
| rs6702192 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7540755 | 0.98[ASN][1000 genomes] |
| rs9287126 | 0.89[CEU][hapmap];0.90[CHB][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532618 | chr1:192537006-193149179 | Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 70 gene(s) | inside rSNPs | diseases |
| 2 | nsv548660 | chr1:192609268-192945348 | Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1933709 | RGS21 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:192638200-192644000 | Weak transcription | Pancreas | Pancrea |
