Variant report

Variant	rs10922298
Chromosome Location	chr1:197811566-197811567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:197806907..197812092-chr1:197812928..197815957,4	K562	blood:
2	chr1:197811474..197814221-chr1:197972912..197974948,2	K562	blood:
3	chr1:197809186..197812182-chr1:197819659..197821945,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10801629	0.90[JPT][hapmap]
rs10801632	0.80[JPT][hapmap]
rs10922323	0.90[JPT][hapmap]
rs1964654	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2201956	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4915251	0.86[ASN][1000 genomes]
rs4915572	0.89[ASN][1000 genomes]
rs6667560	0.85[CEU][hapmap];0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009697	chr1:197804294-197825037	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10922298	DENND1B	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197808000-197814400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:197808800-197812600	Weak transcription	NHEK	skin
3	chr1:197810400-197811800	Enhancers	Fetal Lung	lung
4	chr1:197810400-197812800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:197810600-197811600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr1:197810600-197811800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:197810600-197812000	Enhancers	NHDF-Ad	bronchial
8	chr1:197810600-197812000	Enhancers	Osteobl	bone
9	chr1:197810800-197811600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:197810800-197811800	Weak transcription	Colonic Mucosa	Colon
11	chr1:197810800-197814000	Weak transcription	K562	blood
12	chr1:197811000-197811800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr1:197811200-197811600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr1:197811200-197811600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:197811200-197811600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:197811200-197811600	Enhancers	NHLF	lung
17	chr1:197811200-197811800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr1:197811200-197812200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:197811200-197812600	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr1:197811400-197811600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr1:197811400-197812000	Enhancers	Fetal Brain Male	brain

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