Variant report

Variant	rs2201956
Chromosome Location	chr1:197812879-197812880
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10801629	0.90[JPT][hapmap]
rs10801632	0.80[JPT][hapmap]
rs10922298	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10922323	0.90[JPT][hapmap]
rs1964654	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4915251	0.85[ASN][1000 genomes]
rs4915572	0.88[ASN][1000 genomes]
rs6667560	0.85[CEU][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009697	chr1:197804294-197825037	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197808000-197814400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:197810800-197814000	Weak transcription	K562	blood
3	chr1:197811800-197813400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:197812000-197813400	Weak transcription	NHDF-Ad	bronchial
5	chr1:197812000-197813800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:197812600-197814600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:197812800-197813800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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