Variant report

Variant	rs1092351
Chromosome Location	chr7:140657027-140657028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140651075..140654377-chr7:140654962..140660080,4	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10232600	0.91[ASN][1000 genomes]
rs10234502	0.81[ASN][1000 genomes]
rs10235900	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10240283	0.89[ASN][1000 genomes]
rs10240403	0.89[ASN][1000 genomes]
rs10244133	0.82[ASN][1000 genomes]
rs10251380	0.84[ASN][1000 genomes]
rs10251793	0.84[ASN][1000 genomes]
rs10255130	0.84[ASN][1000 genomes]
rs10255711	0.82[ASN][1000 genomes]
rs10261732	0.84[ASN][1000 genomes]
rs10263448	0.91[ASN][1000 genomes]
rs10272940	0.84[ASN][1000 genomes]
rs10281173	0.82[ASN][1000 genomes]
rs10281508	0.84[ASN][1000 genomes]
rs11981790	0.82[ASN][1000 genomes]
rs1267602	0.82[ASN][1000 genomes]
rs1267603	0.84[ASN][1000 genomes]
rs1267610	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1267612	0.82[ASN][1000 genomes]
rs1267615	0.82[ASN][1000 genomes]
rs1267616	0.82[ASN][1000 genomes]
rs1267618	0.84[ASN][1000 genomes]
rs1267621	0.82[ASN][1000 genomes]
rs1267622	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1267623	0.82[ASN][1000 genomes]
rs1267624	0.82[ASN][1000 genomes]
rs1267625	0.82[ASN][1000 genomes]
rs1267648	0.82[ASN][1000 genomes]
rs17161762	0.82[ASN][1000 genomes]
rs17161763	0.84[ASN][1000 genomes]
rs2109307	0.84[ASN][1000 genomes]
rs2109742	0.82[ASN][1000 genomes]
rs2535946	0.82[ASN][1000 genomes]
rs2535948	0.81[ASN][1000 genomes]
rs2706774	0.84[ASN][1000 genomes]
rs2706775	0.82[ASN][1000 genomes]
rs28605757	0.92[ASN][1000 genomes]
rs4140846	0.82[ASN][1000 genomes]
rs4725437	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4726020	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56797136	0.84[ASN][1000 genomes]
rs57248447	0.84[ASN][1000 genomes]
rs59055264	0.82[ASN][1000 genomes]
rs62484301	0.84[ASN][1000 genomes]
rs6464157	0.92[ASN][1000 genomes]
rs6464159	0.92[ASN][1000 genomes]
rs6944385	0.89[ASN][1000 genomes]
rs6947950	0.82[ASN][1000 genomes]
rs6948703	0.82[ASN][1000 genomes]
rs6950312	0.83[ASN][1000 genomes]
rs6950946	0.84[ASN][1000 genomes]
rs6951776	0.84[ASN][1000 genomes]
rs6952601	0.82[ASN][1000 genomes]
rs6954652	0.84[ASN][1000 genomes]
rs6957490	0.86[ASN][1000 genomes]
rs6961127	0.89[ASN][1000 genomes]
rs6962239	0.89[ASN][1000 genomes]
rs6964724	0.82[ASN][1000 genomes]
rs6964937	0.80[ASN][1000 genomes]
rs6965532	0.84[ASN][1000 genomes]
rs6965559	0.82[ASN][1000 genomes]
rs6966197	0.84[ASN][1000 genomes]
rs765373	0.92[ASN][1000 genomes]
rs7776491	0.82[ASN][1000 genomes]
rs7784523	0.89[ASN][1000 genomes]
rs7785306	0.91[ASN][1000 genomes]
rs7791924	0.82[ASN][1000 genomes]
rs7792984	0.84[ASN][1000 genomes]
rs7793758	0.82[ASN][1000 genomes]
rs7796827	0.84[ASN][1000 genomes]
rs7798031	0.82[ASN][1000 genomes]
rs7798324	0.84[ASN][1000 genomes]
rs7800472	0.83[ASN][1000 genomes]
rs9648715	0.89[ASN][1000 genomes]
rs9648716	0.89[ASN][1000 genomes]
rs964942	0.91[ASN][1000 genomes]
rs9886260	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1092351	TMEM178B	cis	Esophagus Mucosa	GTEx
rs1092351	BRAF	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140656800-140657200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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