Variant report

Variant	rs9886260
Chromosome Location	chr7:140683398-140683399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1092351	0.85[AFR][1000 genomes]
rs11769174	0.87[ASN][1000 genomes]
rs12672764	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7794979	0.85[ASN][1000 genomes]
rs7810541	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9886312	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9886260	MRPS33	Cis_1M	lymphoblastoid	RTeQTL
rs9886260	TMEM178B	cis	Esophagus Mucosa	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140681200-140683600	Enhancers	Primary hematopoietic stem cells	blood
2	chr7:140681400-140683400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:140681400-140683600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:140682600-140683600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:140683200-140683400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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