Variant report

Variant	rs10923811
Chromosome Location	chr4:26699423-26699424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:26699344-26699866	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000200999	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10802092	0.83[ASN][1000 genomes]
rs12038241	0.83[EUR][1000 genomes]
rs12133542	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12141041	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12735092	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1341007	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1341018	0.86[ASN][1000 genomes]
rs2182243	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275607	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2298027	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3765949	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3765951	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3765953	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6667104	0.91[ASN][1000 genomes]
rs6670497	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6675731	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7513419	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7552690	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs879332	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1822380	chr4:26690284-26726780	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
2	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
6	chr4:26687000-26727000	Weak transcription	Left Ventricle	heart
7	chr4:26692200-26712200	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:26692400-26726400	Weak transcription	Ovary	ovary
9	chr4:26692800-26699600	Weak transcription	Dnd41	blood
10	chr4:26693000-26711000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:26693000-26716000	Weak transcription	HSMM	muscle
12	chr4:26693400-26703000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:26694200-26709600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:26694400-26718600	Weak transcription	Osteobl	bone
15	chr4:26694600-26711600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:26695000-26704400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:26696200-26703200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:26696200-26718800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:26696200-26726400	Weak transcription	Thymus	Thymus
20	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
21	chr4:26696400-26710600	Weak transcription	Fetal Thymus	thymus
22	chr4:26696400-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:26696400-26726600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:26697200-26702800	Weak transcription	Muscle Satellite Cultured Cells	--

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