Variant report

Variant	rs12038241
Chromosome Location	chr1:119946998-119946999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10923804	0.89[CHB][hapmap]
rs10923805	0.89[CHB][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10923807	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10923811	0.83[EUR][1000 genomes]
rs12035411	0.89[CHB][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12038498	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12133542	0.85[EUR][1000 genomes]
rs12135388	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12141041	0.92[CEU][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes]
rs12409531	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12735092	0.82[EUR][1000 genomes]
rs12740687	0.89[CHB][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1341007	0.85[CEU][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs1417604	0.83[ASN][1000 genomes]
rs1856887	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2005390	0.83[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2182243	0.84[EUR][1000 genomes]
rs2275607	0.82[EUR][1000 genomes]
rs2298027	0.81[EUR][1000 genomes]
rs2298028	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs3765949	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs3765951	0.85[CEU][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs3765953	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs3765955	0.89[CHB][hapmap]
rs4659004	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4659170	0.83[ASN][1000 genomes]
rs4659171	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6658331	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6667203	0.89[CHB][hapmap]
rs6667679	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs6670497	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs6675731	0.84[EUR][1000 genomes]
rs7513419	0.82[EUR][1000 genomes]
rs7552690	0.81[EUR][1000 genomes]
rs879332	0.85[EUR][1000 genomes]
rs879333	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs879334	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932014	chr1:119476480-120471049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv917091	chr1:119688975-120023222	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv34089	chr1:119752112-120072961	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1000391	chr1:119837978-120287056	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv535077	chr1:119837978-120287056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv1004662	chr1:119847447-120154798	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	esv2763647	chr1:119929442-120154798	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv2599	chr1:119935023-119967748	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119946400-119948200	ZNF genes & repeats	Liver	Liver

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