Variant report

Variant	rs10928224
Chromosome Location	chr2:145465576-145465577
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:145464586..145466817-chr2:145471212..145475328,4	K562	blood:
2	chr2:145455727..145457310-chr2:145465404..145467712,2	K562	blood:
3	chr2:145463087..145468064-chr2:145468500..145471116,5	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10496966	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10803510	0.90[JPT][hapmap]
rs10928227	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11883829	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11902294	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs12104619	0.81[AFR][1000 genomes]
rs12471698	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12478142	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12623452	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs12997597	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13015001	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13016064	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1346344	0.91[JPT][hapmap]
rs1365902	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1365905	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1384783	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1427500	0.90[JPT][hapmap]
rs1427506	0.84[JPT][hapmap]
rs1427507	0.91[JPT][hapmap]
rs1427509	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1483491	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1529386	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1529387	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1564697	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1896454	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2162571	0.90[JPT][hapmap]
rs2195114	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2381651	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35099259	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs3856364	0.84[AFR][1000 genomes]
rs4271712	0.87[AMR][1000 genomes]
rs4471836	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4662232	0.83[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs4662393	0.80[AFR][1000 genomes]
rs7579453	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7580571	0.86[AFR][1000 genomes]
rs900554	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs958500	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs958501	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs980772	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs990847	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv529501	chr2:145257682-145485605	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv834397	chr2:145439528-145608628	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv962041	chr2:145465093-145468381	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145450400-145469200	Weak transcription	Aorta	Aorta
2	chr2:145463200-145469600	Weak transcription	HSMMtube	muscle
3	chr2:145463200-145495600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:145464400-145469400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:145464600-145468400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr2:145464600-145473400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:145465000-145466200	Enhancers	Fetal Brain Female	brain
8	chr2:145465400-145465600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:145465400-145465600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:145465400-145465600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr2:145465400-145465600	Enhancers	Brain Hippocampus Middle	brain
12	chr2:145465400-145465600	Enhancers	K562	blood
13	chr2:145465400-145466200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:145465400-145466600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:145465400-145467600	Enhancers	Brain Substantia Nigra	brain
16	chr2:145465400-145468000	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links