The 2.0 version of rSNPBase

Variant report

Variant rs10929609
Chromosome Location chr2:9879335-9879336
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:9875000-9879400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
2 chr2:9875000-9879400 Enhancers Primary T helper cells PMA-I stimulated --
3 chr2:9875200-9879400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
4 chr2:9875200-9879400 Enhancers Primary T helper cells fromperipheralblood blood
5 chr2:9877400-9885000 Weak transcription HMEC breast
6 chr2:9877800-9880200 Enhancers Fetal Heart heart
7 chr2:9878200-9879400 Enhancers Fetal Thymus thymus
8 chr2:9878200-9880200 Enhancers Fetal Lung lung
9 chr2:9878400-9879400 Enhancers Fetal Adrenal Gland Adrenal Gland
10 chr2:9878400-9879400 Enhancers Hela-S3 cervix
11 chr2:9878400-9879600 Enhancers Placenta Placenta
12 chr2:9878400-9879600 Enhancers Right Ventricle heart
13 chr2:9878400-9879600 Enhancers K562 blood
14 chr2:9878400-9880000 Enhancers Lung lung
15 chr2:9878400-9880000 Enhancers GM12878-XiMat blood
16 chr2:9878400-9880200 Enhancers Sigmoid Colon Sigmoid Colon
17 chr2:9878400-9881400 Enhancers Left Ventricle heart
18 chr2:9878600-9879400 Enhancers Primary monocytes fromperipheralblood blood
19 chr2:9878600-9880000 Enhancers Primary hematopoietic stem cells short term culture blood
20 chr2:9878600-9880200 Flanking Active TSS Rectal Mucosa Donor 29 rectum
21 chr2:9878800-9879400 Enhancers Primary B cells from peripheral blood blood
22 chr2:9878800-9879400 Enhancers Primary hematopoietic stem cells blood
23 chr2:9878800-9879400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
24 chr2:9878800-9879400 Enhancers Brain Hippocampus Middle brain
25 chr2:9878800-9879400 Enhancers NHLF lung
26 chr2:9878800-9879600 Enhancers Small Intestine intestine
27 chr2:9878800-9880000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
28 chr2:9878800-9880000 Enhancers Spleen Spleen
29 chr2:9878800-9880200 Flanking Active TSS Skeletal Muscle Male skeletal muscle
30 chr2:9878800-9880200 Flanking Active TSS Skeletal Muscle Female skeletal muscle
31 chr2:9879000-9879400 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
32 chr2:9879000-9879400 Enhancers Brain Cingulate Gyrus brain
33 chr2:9879000-9879400 Flanking Active TSS Stomach Smooth Muscle stomach
34 chr2:9879000-9879600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr2:9879000-9879600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr2:9879000-9879600 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
37 chr2:9879000-9879600 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
38 chr2:9879000-9879600 Flanking Active TSS Rectal Mucosa Donor 31 rectum
39 chr2:9879000-9879600 Flanking Active TSS HSMMtube muscle
40 chr2:9879000-9879800 Enhancers NH-A brain
41 chr2:9879000-9879800 Flanking Active TSS Osteobl bone
42 chr2:9879000-9880000 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
43 chr2:9879000-9880000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
44 chr2:9879000-9880000 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
45 chr2:9879000-9880000 Flanking Active TSS Muscle Satellite Cultured Cells --
46 chr2:9879000-9880200 Flanking Active TSS Duodenum Mucosa Duodenum
47 chr2:9879000-9881000 Weak transcription A549 lung
48 chr2:9879200-9879400 Flanking Active TSS Primary B cells from cord blood blood
49 chr2:9879200-9879400 Enhancers Primary mononuclear cells fromperipheralblood Blood
50 chr2:9879200-9879400 Flanking Active TSS Colon Smooth Muscle Colon

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Last update: Aug 31, 2015