Variant report

Variant	rs10929659
Chromosome Location	chr2:10532968-10532969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10531124..10533976-chr2:10546440..10548143,2	MCF-7	breast:
2	chr2:10531886..10534694-chr2:10548127..10550273,2	K562	blood:
3	chr2:10520062..10522966-chr2:10532348..10534201,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10169634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11686947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16856193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2270299	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[EUR][1000 genomes]
rs2270300	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[EUR][1000 genomes]
rs2270301	1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[EUR][1000 genomes]
rs35158739	0.90[EUR][1000 genomes]
rs7570714	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7582930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7583465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7584151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7584523	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7584526	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873641	chr2:10480415-10544640	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10518000-10534800	Enhancers	Stomach Mucosa	stomach
2	chr2:10523000-10541000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:10523200-10533000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:10523200-10534200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr2:10523400-10534000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr2:10523400-10534200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:10523400-10537800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr2:10523600-10539000	Weak transcription	Thymus	Thymus
9	chr2:10524800-10536200	Weak transcription	Primary T cells from cord blood	blood
10	chr2:10526600-10533400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:10526800-10537400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:10527200-10542400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:10527600-10536200	Weak transcription	Fetal Stomach	stomach
14	chr2:10529000-10533400	Enhancers	Liver	Liver
15	chr2:10530000-10540800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr2:10530200-10533000	Weak transcription	Brain Germinal Matrix	brain
17	chr2:10530200-10533400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr2:10530200-10536000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr2:10530400-10533000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr2:10530400-10533400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:10530400-10533400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:10530400-10537600	Weak transcription	Psoas Muscle	Psoas
23	chr2:10530400-10538800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr2:10530400-10540800	Weak transcription	Colon Smooth Muscle	Colon
25	chr2:10530600-10539800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:10530600-10544400	Weak transcription	Brain Angular Gyrus	brain
27	chr2:10531000-10533600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr2:10531000-10534400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:10531000-10536000	Weak transcription	GM12878-XiMat	blood
30	chr2:10531000-10539800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:10531000-10540600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr2:10531000-10542400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:10531000-10544600	Weak transcription	NHLF	lung
34	chr2:10531200-10533000	Weak transcription	Right Atrium	heart
35	chr2:10531200-10533200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr2:10531200-10533200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:10531200-10533400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr2:10531200-10534800	Enhancers	Hela-S3	cervix
39	chr2:10531200-10539800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr2:10531200-10542400	Weak transcription	HSMMtube	muscle
41	chr2:10531200-10542400	Weak transcription	NH-A	brain
42	chr2:10531200-10544200	Weak transcription	Brain Substantia Nigra	brain
43	chr2:10531400-10533000	Weak transcription	Adipose Nuclei	Adipose
44	chr2:10531400-10533400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr2:10531400-10539800	Weak transcription	HSMM	muscle
46	chr2:10531400-10541600	Weak transcription	Osteobl	bone
47	chr2:10531600-10533000	Weak transcription	HMEC	breast
48	chr2:10531600-10533400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr2:10531600-10534000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr2:10531800-10533800	Enhancers	HepG2	liver

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