Variant report

Variant	rs35158739
Chromosome Location	chr2:10540199-10540200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10539665..10541710-chr2:10544795..10547261,2	MCF-7	breast:
2	chr2:10537541..10541103-chr2:10547321..10550436,3	MCF-7	breast:
3	chr2:10538831..10544260-chr2:10544573..10548851,6	K562	blood:
4	chr2:10539200..10541759-chr2:10543040..10545009,3	K562	blood:
5	chr2:10409644..10411196-chr2:10538400..10540753,2	MCF-7	breast:
6	chr2:10533744..10537127-chr2:10539374..10542865,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10169634	0.91[EUR][1000 genomes]
rs10189719	0.85[ASN][1000 genomes]
rs10929659	0.90[EUR][1000 genomes]
rs11686947	0.91[EUR][1000 genomes]
rs12467741	0.85[ASN][1000 genomes]
rs12472775	0.85[ASN][1000 genomes]
rs16856193	0.92[EUR][1000 genomes]
rs1808315	0.90[ASN][1000 genomes]
rs2270299	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2270300	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2270301	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3755263	0.84[ASN][1000 genomes]
rs3755264	0.85[ASN][1000 genomes]
rs3771128	0.84[ASN][1000 genomes]
rs3771134	0.85[ASN][1000 genomes]
rs3771138	0.85[ASN][1000 genomes]
rs3771141	0.90[ASN][1000 genomes]
rs62130186	0.97[ASN][1000 genomes]
rs62130189	0.80[ASN][1000 genomes]
rs62130190	0.84[ASN][1000 genomes]
rs7570714	0.89[EUR][1000 genomes]
rs7582930	0.91[EUR][1000 genomes]
rs7583465	0.91[EUR][1000 genomes]
rs7584151	0.89[EUR][1000 genomes]
rs7584523	0.90[EUR][1000 genomes]
rs7584526	0.89[EUR][1000 genomes]
rs876614	0.85[ASN][1000 genomes]
rs876615	0.85[ASN][1000 genomes]
rs876616	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873641	chr2:10480415-10544640	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv873643	chr2:10535481-10583160	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv873644	chr2:10537347-10576424	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv873645	chr2:10537347-10612091	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
6	esv3439050	chr2:10539751-10542249	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10523000-10541000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:10527200-10542400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:10530000-10540800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:10530400-10540800	Weak transcription	Colon Smooth Muscle	Colon
5	chr2:10530600-10544400	Weak transcription	Brain Angular Gyrus	brain
6	chr2:10531000-10540600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr2:10531000-10542400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:10531000-10544600	Weak transcription	NHLF	lung
9	chr2:10531200-10542400	Weak transcription	HSMMtube	muscle
10	chr2:10531200-10542400	Weak transcription	NH-A	brain
11	chr2:10531200-10544200	Weak transcription	Brain Substantia Nigra	brain
12	chr2:10531400-10541600	Weak transcription	Osteobl	bone
13	chr2:10533000-10540200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr2:10533000-10551800	Weak transcription	Ovary	ovary
15	chr2:10533400-10549200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:10533600-10544200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr2:10533600-10544200	Weak transcription	Fetal Brain Female	brain
18	chr2:10534000-10540600	Weak transcription	Esophagus	oesophagus
19	chr2:10534000-10540800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr2:10534000-10541000	Strong transcription	Fetal Intestine Small	intestine
21	chr2:10534000-10545400	Weak transcription	Fetal Lung	lung
22	chr2:10536000-10541400	Genic enhancers	Spleen	Spleen
23	chr2:10536200-10541600	Strong transcription	Fetal Stomach	stomach
24	chr2:10536600-10540600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr2:10536800-10540400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr2:10537000-10540600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr2:10537000-10540600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:10537000-10543000	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr2:10537000-10543400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr2:10537400-10540200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr2:10537400-10541200	Enhancers	Adipose Nuclei	Adipose
32	chr2:10537400-10542600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr2:10537400-10542600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr2:10537400-10542800	Enhancers	Left Ventricle	heart
35	chr2:10537600-10542600	Genic enhancers	Lung	lung
36	chr2:10537800-10540600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr2:10538000-10540200	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr2:10538000-10540200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr2:10538000-10540800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr2:10538200-10541800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr2:10538200-10542800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr2:10538200-10544400	Weak transcription	Psoas Muscle	Psoas
43	chr2:10538800-10540200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr2:10538800-10540200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr2:10538800-10540600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr2:10538800-10541400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr2:10539000-10540600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr2:10539000-10540600	Strong transcription	A549	lung
49	chr2:10539000-10542000	Strong transcription	Thymus	Thymus
50	chr2:10539200-10540200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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