Variant report

Variant	rs10930512
Chromosome Location	chr2:173007626-173007627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12470583	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13021554	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1843756	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2306797	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4972427	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4972623	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4972636	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7604737	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs991485	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528818	chr2:173001058-173013373	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv435726	chr2:173001856-173008530	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3459871	chr2:173002306-173009204	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3524175	chr2:173002605-173009327	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3451254	chr2:173003006-173008754	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3386960	chr2:173003556-173008504	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3459869	chr2:173003788-173007782	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv989435	chr2:173004125-173009154	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3340009	chr2:173005731-173008579	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	nsv511160	chr2:173006114-173008793	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173002200-173012600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173006600-173012600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:173006800-173010600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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