Variant report

Variant	rs13021554
Chromosome Location	chr2:172997088-172997089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10930512	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12470583	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1843756	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2306797	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4972427	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4972623	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4972636	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7604737	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972957	0.89[YRI][hapmap]
rs991485	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172995800-172999400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:172996400-172997400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr2:172996400-172998400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:172996800-172997200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr2:172996800-172997200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr2:172996800-172997200	Enhancers	HSMMtube	muscle
7	chr2:172996800-172997400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr2:172996800-172997400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:172996800-172997400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:172996800-172997600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr2:172996800-172998000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr2:172996800-172998200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:172996800-172998400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr2:172997000-172997200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:172997000-172997400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:172997000-172997400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr2:172997000-172997400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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