Variant report

Variant	rs10931453
Chromosome Location	chr2:191297568-191297569
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr2:191297265-191297619	GM12878	blood:	n/a	n/a
2	BCLAF1	chr2:191297211-191297634	GM12878	blood:	n/a	n/a
3	POU2F2	chr2:191297301-191297576	GM12891	blood:	n/a	n/a
4	RUNX3	chr2:191297190-191297615	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
MFSD6	TF binding region

rs_ID	r²[population]
rs10931452	0.83[AMR][1000 genomes]
rs12475614	0.83[AMR][1000 genomes]
rs12693575	0.83[AMR][1000 genomes]
rs13020324	0.83[AMR][1000 genomes]
rs2354878	0.83[AMR][1000 genomes]
rs4853702	0.83[AMR][1000 genomes]
rs4853705	0.85[AMR][1000 genomes]
rs6434391	0.83[AMR][1000 genomes]
rs6707691	0.83[AMR][1000 genomes]
rs7557681	0.83[AMR][1000 genomes]
rs7596573	0.83[AMR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs10931453	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191273800-191301400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:191274800-191300800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:191278600-191301200	Weak transcription	Pancreas	Pancrea
4	chr2:191278800-191300800	Weak transcription	Fetal Thymus	thymus
5	chr2:191278800-191301200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:191279000-191300800	Weak transcription	Esophagus	oesophagus
7	chr2:191279200-191303000	Weak transcription	NHEK	skin
8	chr2:191281400-191298600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:191282800-191301200	Weak transcription	Fetal Brain Male	brain
10	chr2:191283200-191301000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr2:191284200-191301000	Weak transcription	Gastric	stomach
12	chr2:191284200-191301200	Weak transcription	Right Ventricle	heart
13	chr2:191284200-191311000	Weak transcription	Psoas Muscle	Psoas
14	chr2:191285600-191301000	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:191287000-191300800	Weak transcription	Brain Germinal Matrix	brain
16	chr2:191290400-191301200	Weak transcription	Brain Anterior Caudate	brain
17	chr2:191290800-191300800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr2:191291600-191299800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr2:191292200-191298600	Weak transcription	Lung	lung
20	chr2:191292200-191299600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr2:191292200-191300800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:191292200-191301000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr2:191293200-191299800	Weak transcription	Primary B cells from cord blood	blood
24	chr2:191293200-191301000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr2:191293200-191301200	Weak transcription	Brain Substantia Nigra	brain
26	chr2:191293200-191301600	Weak transcription	A549	lung
27	chr2:191293400-191300600	Weak transcription	Dnd41	blood
28	chr2:191296200-191298400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr2:191296400-191298400	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr2:191296400-191298800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr2:191296400-191300200	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr2:191296400-191300400	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr2:191296400-191300400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr2:191296400-191300800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr2:191296600-191300800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr2:191296800-191298400	Enhancers	Duodenum Mucosa	Duodenum
37	chr2:191296800-191299000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr2:191296800-191300400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr2:191296800-191300600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr2:191296800-191311400	Weak transcription	Fetal Lung	lung
41	chr2:191297000-191301200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:191297000-191301200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr2:191297000-191301600	Weak transcription	Fetal Intestine Small	intestine
44	chr2:191297200-191297600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr2:191297200-191297800	Enhancers	GM12878-XiMat	blood
46	chr2:191297200-191298400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:191297200-191298600	Weak transcription	Brain Hippocampus Middle	brain
48	chr2:191297200-191299400	Weak transcription	Primary B cells from peripheral blood	blood
49	chr2:191297200-191300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr2:191297200-191300800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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