Variant report

Variant	rs10933822
Chromosome Location	chr3:105273438-105273439
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105272104..105273978-chr3:105278309..105280782,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10755065	0.93[AFR][1000 genomes]
rs10933821	0.87[YRI][hapmap];0.93[AFR][1000 genomes]
rs10933823	0.94[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10933824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2030515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57171977	0.86[AFR][1000 genomes]
rs57758302	0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6437602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6766965	0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6792801	0.87[YRI][hapmap];0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7611245	0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7643664	0.87[YRI][hapmap];0.96[AFR][1000 genomes]
rs9283551	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv829651	chr3:105203424-105402136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv460811	chr3:105212993-105316769	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv591240	chr3:105212993-105316769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105221400-105300400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:105223800-105274800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:105232200-105274000	Weak transcription	HSMMtube	muscle
4	chr3:105234600-105274600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:105237800-105274600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:105237800-105275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:105242000-105293600	Weak transcription	Lung	lung
8	chr3:105242400-105280400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:105244800-105275800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:105246600-105284400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:105248000-105281200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:105248400-105291200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:105249400-105278600	Weak transcription	Small Intestine	intestine
14	chr3:105249800-105284000	Weak transcription	Fetal Stomach	stomach
15	chr3:105249800-105285200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:105251800-105274400	Weak transcription	Dnd41	blood
17	chr3:105254800-105279800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:105258000-105274600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr3:105258600-105273600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:105258800-105274400	Strong transcription	Liver	Liver
21	chr3:105258800-105274400	Strong transcription	NH-A	brain
22	chr3:105259400-105274000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:105259400-105274200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:105259400-105281200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr3:105260800-105297000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:105260800-105299800	Weak transcription	Pancreas	Pancrea
27	chr3:105262400-105274200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:105263000-105274200	Weak transcription	Fetal Kidney	kidney
29	chr3:105263000-105295400	Weak transcription	Brain Angular Gyrus	brain
30	chr3:105264600-105273600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:105265800-105274000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:105267200-105274600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:105267600-105293800	Weak transcription	Brain Anterior Caudate	brain
34	chr3:105268400-105297800	Weak transcription	NHLF	lung
35	chr3:105268800-105274200	Strong transcription	Primary B cells from cord blood	blood
36	chr3:105269000-105273600	Weak transcription	Hela-S3	cervix
37	chr3:105269200-105274000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:105269800-105273800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:105269800-105273800	Strong transcription	Primary hematopoietic stem cells	blood
40	chr3:105269800-105274000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:105270000-105273600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:105270200-105275000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:105270600-105278200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr3:105270800-105277600	Weak transcription	Fetal Heart	heart
45	chr3:105271400-105273600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:105271600-105280600	Weak transcription	Fetal Intestine Large	intestine
47	chr3:105271600-105282600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr3:105271600-105297000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr3:105271600-105303000	Weak transcription	Aorta	Aorta
50	chr3:105271800-105285800	Weak transcription	HUVEC	blood vessel

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