Variant report

Variant	rs10933823
Chromosome Location	chr3:105274510-105274511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105274336..105276377-chr3:105279991..105282080,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10755065	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10933821	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10933822	0.94[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10933824	0.94[AFR][1000 genomes]
rs2030515	0.81[JPT][hapmap];0.94[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2171146	0.83[EUR][1000 genomes]
rs2279388	0.83[EUR][1000 genomes]
rs2279389	0.83[EUR][1000 genomes]
rs57171977	0.89[AFR][1000 genomes]
rs57758302	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6437602	0.94[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6766965	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611245	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9283551	0.92[AFR][1000 genomes]
rs9811466	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv829651	chr3:105203424-105402136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv460811	chr3:105212993-105316769	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv591240	chr3:105212993-105316769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105221400-105300400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:105223800-105274800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:105234600-105274600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:105237800-105274600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:105237800-105275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:105242000-105293600	Weak transcription	Lung	lung
7	chr3:105242400-105280400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:105244800-105275800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:105246600-105284400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:105248000-105281200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:105248400-105291200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:105249400-105278600	Weak transcription	Small Intestine	intestine
13	chr3:105249800-105284000	Weak transcription	Fetal Stomach	stomach
14	chr3:105249800-105285200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:105254800-105279800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:105258000-105274600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr3:105259400-105281200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr3:105260800-105297000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:105260800-105299800	Weak transcription	Pancreas	Pancrea
20	chr3:105263000-105295400	Weak transcription	Brain Angular Gyrus	brain
21	chr3:105267200-105274600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:105267600-105293800	Weak transcription	Brain Anterior Caudate	brain
23	chr3:105268400-105297800	Weak transcription	NHLF	lung
24	chr3:105270200-105275000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr3:105270600-105278200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr3:105270800-105277600	Weak transcription	Fetal Heart	heart
27	chr3:105271600-105280600	Weak transcription	Fetal Intestine Large	intestine
28	chr3:105271600-105282600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr3:105271600-105297000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:105271600-105303000	Weak transcription	Aorta	Aorta
31	chr3:105271800-105285800	Weak transcription	HUVEC	blood vessel
32	chr3:105272000-105274600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:105272000-105291200	Weak transcription	Brain Substantia Nigra	brain
34	chr3:105272200-105274600	Weak transcription	HepG2	liver
35	chr3:105272200-105312800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:105272400-105302800	Weak transcription	NHEK	skin
37	chr3:105272800-105275000	Enhancers	HSMM	muscle
38	chr3:105273000-105295200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr3:105273200-105274800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr3:105273200-105275800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr3:105273200-105276000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:105273200-105292200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr3:105273200-105294000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:105273200-105295800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr3:105273200-105303000	Weak transcription	HMEC	breast
46	chr3:105273400-105276000	Weak transcription	GM12878-XiMat	blood
47	chr3:105273400-105276400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr3:105273400-105276400	Weak transcription	Osteobl	bone
49	chr3:105273400-105280800	Weak transcription	A549	lung
50	chr3:105273400-105285600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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