Variant report

Variant	rs10934219
Chromosome Location	chr3:112847489-112847490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112841500..112843194-chr3:112847365..112849166,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12639091	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1797616	0.82[ASN][1000 genomes]
rs1797617	0.82[ASN][1000 genomes]
rs3101349	0.82[ASN][1000 genomes]
rs57075327	1.00[EUR][1000 genomes]
rs57521234	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs58509464	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs58885804	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs59033043	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59117247	0.80[EUR][1000 genomes]
rs60283613	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs61011112	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs61269418	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877345	chr3:112826253-112848851	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112843400-112851200	Weak transcription	NHEK	skin
2	chr3:112846800-112848000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:112846800-112848400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:112846800-112849400	Enhancers	Fetal Stomach	stomach
5	chr3:112847000-112847600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:112847000-112847600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:112847000-112847600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:112847000-112847600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:112847000-112847600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:112847000-112847600	Enhancers	HSMM	muscle
11	chr3:112847000-112847800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:112847000-112847800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:112847000-112847800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:112847000-112847800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:112847000-112848000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:112847000-112848400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:112847200-112847600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:112847200-112847600	Enhancers	Colon Smooth Muscle	Colon
19	chr3:112847200-112847600	Enhancers	A549	lung
20	chr3:112847200-112848000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr3:112847400-112847800	Enhancers	NH-A	brain

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