Variant report

Variant	rs1797616
Chromosome Location	chr3:112836389-112836390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10934216	0.86[AFR][1000 genomes]
rs10934217	0.87[AFR][1000 genomes]
rs10934219	0.82[ASN][1000 genomes]
rs12486305	0.94[MEX][hapmap]
rs12639091	0.84[ASN][1000 genomes]
rs1632500	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1795169	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1795173	0.91[ASN][1000 genomes]
rs1795174	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1797617	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045687	0.82[AFR][1000 genomes]
rs2045688	0.81[AFR][1000 genomes]
rs2613920	0.84[AFR][1000 genomes]
rs2613921	0.87[AFR][1000 genomes]
rs2613922	0.87[AFR][1000 genomes]
rs2613926	0.91[ASN][1000 genomes]
rs2613928	0.83[ASN][1000 genomes]
rs2613951	0.86[AMR][1000 genomes]
rs2613954	0.82[AFR][1000 genomes]
rs2700199	0.88[AMR][1000 genomes]
rs2700202	0.87[AFR][1000 genomes]
rs2700203	0.85[AFR][1000 genomes]
rs2700206	0.82[AFR][1000 genomes]
rs2700209	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2700210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2700212	0.91[ASN][1000 genomes]
rs2700215	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2700216	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2951464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3101349	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58509464	0.88[ASN][1000 genomes]
rs59033043	0.88[ASN][1000 genomes]
rs60283613	0.84[ASN][1000 genomes]
rs61011112	0.84[ASN][1000 genomes]
rs62262831	0.83[AFR][1000 genomes]
rs6807101	0.86[AFR][1000 genomes]
rs7632483	0.88[AFR][1000 genomes]
rs7650532	0.87[AFR][1000 genomes]
rs878460	0.85[AFR][1000 genomes]
rs9288969	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877345	chr3:112826253-112848851	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv522974	chr3:112832063-112836389	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112835800-112840600	Enhancers	Fetal Stomach	stomach
2	chr3:112836000-112837200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:112836000-112837200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:112836000-112837200	Enhancers	Osteobl	bone
5	chr3:112836000-112837600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:112836000-112837600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:112836000-112837600	Enhancers	Hela-S3	cervix
8	chr3:112836000-112837800	Enhancers	Colon Smooth Muscle	Colon
9	chr3:112836200-112836400	Flanking Active TSS	NH-A	brain
10	chr3:112836200-112836600	Enhancers	Fetal Heart	heart
11	chr3:112836200-112836800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:112836200-112836800	Enhancers	NHDF-Ad	bronchial
13	chr3:112836200-112836800	Enhancers	NHEK	skin
14	chr3:112836200-112836800	Enhancers	NHLF	lung
15	chr3:112836200-112837000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:112836200-112837000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:112836200-112837000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:112836200-112837000	Enhancers	HSMM	muscle
19	chr3:112836200-112837200	Enhancers	Stomach Smooth Muscle	stomach
20	chr3:112836200-112837400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:112836200-112837600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:112836200-112837600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:112836200-112837600	Enhancers	Adipose Nuclei	Adipose
24	chr3:112836200-112837600	Enhancers	Fetal Muscle Leg	muscle
25	chr3:112836200-112837600	Enhancers	Rectal Smooth Muscle	rectum

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