Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12486305	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12495166	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13086237	0.80[AMR][1000 genomes]
rs1795169	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1797616	0.82[AFR][1000 genomes]
rs1797617	0.83[AFR][1000 genomes]
rs1797621	0.82[AFR][1000 genomes]
rs2926811	0.81[AFR][1000 genomes]
rs2951458	0.82[AFR][1000 genomes]
rs2951459	0.82[AFR][1000 genomes]
rs2951460	0.82[AFR][1000 genomes]
rs2951462	0.82[AFR][1000 genomes]
rs2951463	0.82[AFR][1000 genomes]
rs3101349	0.83[AFR][1000 genomes]
rs34162902	0.82[AMR][1000 genomes]
rs34302044	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35097816	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35728677	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35840548	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36107112	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3852010	0.82[AFR][1000 genomes]
rs4387939	0.82[AFR][1000 genomes]
rs58152322	0.86[ASN][1000 genomes]
rs73221996	0.86[ASN][1000 genomes]
rs9288969	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877345	chr3:112826253-112848851	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112843200-112847200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:112843400-112851200	Weak transcription	NHEK	skin
3	chr3:112846800-112848000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:112846800-112848400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:112846800-112849400	Enhancers	Fetal Stomach	stomach
6	chr3:112847000-112847600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:112847000-112847600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:112847000-112847600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:112847000-112847600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:112847000-112847600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:112847000-112847600	Enhancers	HSMM	muscle
12	chr3:112847000-112847800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:112847000-112847800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:112847000-112847800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:112847000-112847800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr3:112847000-112848000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:112847000-112848400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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