Variant report

Variant	rs2700215
Chromosome Location	chr3:112835117-112835118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10934216	0.84[AFR][1000 genomes]
rs10934217	0.85[AFR][1000 genomes]
rs12639091	0.88[ASN][1000 genomes]
rs1632500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795169	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1795173	0.94[ASN][1000 genomes]
rs1795174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1797616	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1797617	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2613920	0.81[AFR][1000 genomes]
rs2613921	0.85[AFR][1000 genomes]
rs2613922	0.85[AFR][1000 genomes]
rs2613926	0.94[ASN][1000 genomes]
rs2613928	0.86[ASN][1000 genomes]
rs2613951	0.86[AMR][1000 genomes]
rs2700199	0.88[AMR][1000 genomes]
rs2700202	0.85[AFR][1000 genomes]
rs2700203	0.82[AFR][1000 genomes]
rs2700209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2700210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2700212	0.94[ASN][1000 genomes]
rs2700216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2951464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58509464	0.84[ASN][1000 genomes]
rs59033043	0.84[ASN][1000 genomes]
rs60283613	0.88[ASN][1000 genomes]
rs61011112	0.88[ASN][1000 genomes]
rs62262831	0.82[AFR][1000 genomes]
rs6807101	0.83[AFR][1000 genomes]
rs7632483	0.85[AFR][1000 genomes]
rs7650532	0.85[AFR][1000 genomes]
rs878460	0.83[AFR][1000 genomes]
rs9288969	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877345	chr3:112826253-112848851	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv522974	chr3:112832063-112836389	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112828200-112836200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:112830000-112835200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:112830200-112835800	Weak transcription	Fetal Stomach	stomach
4	chr3:112830800-112836200	Weak transcription	NHEK	skin
5	chr3:112831200-112836000	Weak transcription	Hela-S3	cervix
6	chr3:112833400-112836200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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