Variant report

Variant	rs10935071
Chromosome Location	chr3:133394159-133394160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1006098	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11924101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497433	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12497513	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1444597	0.82[AMR][1000 genomes]
rs1822744	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1867503	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1867504	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1867505	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2589269	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3772680	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4854736	0.83[EUR][1000 genomes]
rs4854737	0.91[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133389400-133394600	Enhancers	HepG2	liver
2	chr3:133393200-133395800	Enhancers	GM12878-XiMat	blood
3	chr3:133393600-133395000	Enhancers	Liver	Liver
4	chr3:133393600-133395200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr3:133393800-133394200	Weak transcription	Pancreas	Pancrea
6	chr3:133393800-133395400	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:133393800-133395800	Enhancers	Adipose Nuclei	Adipose
8	chr3:133393800-133396200	Weak transcription	Right Atrium	heart
9	chr3:133393800-133406800	Weak transcription	Brain Substantia Nigra	brain
10	chr3:133394000-133394800	Weak transcription	Brain Angular Gyrus	brain
11	chr3:133394000-133395400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr3:133394000-133399600	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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