Variant report

Variant	rs4854736
Chromosome Location	chr3:133324929-133324930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133323853..133325578-chr3:133328541..133330294,2	MCF-7	breast:
2	chr3:133319765..133322733-chr3:133322772..133325091,2	K562	blood:
3	chr3:133322694..133325425-chr3:133337304..133340261,3	K562	blood:

rs_ID	r²[population]
rs10935070	0.86[AFR][1000 genomes]
rs10935071	0.83[EUR][1000 genomes]
rs11924101	0.83[EUR][1000 genomes]
rs12497433	0.82[EUR][1000 genomes]
rs12497513	0.83[EUR][1000 genomes]
rs12637070	0.88[ASN][1000 genomes]
rs1822744	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3772680	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4854737	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62282416	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133305800-133330600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:133306400-133342800	Weak transcription	Colonic Mucosa	Colon
3	chr3:133307000-133328400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:133307200-133335800	Weak transcription	Pancreas	Pancrea
5	chr3:133307400-133326400	Weak transcription	Right Ventricle	heart
6	chr3:133307400-133331200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:133307400-133347200	Weak transcription	Brain Angular Gyrus	brain
8	chr3:133308000-133335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:133308200-133326400	Weak transcription	Fetal Brain Male	brain
10	chr3:133308200-133326400	Weak transcription	Fetal Kidney	kidney
11	chr3:133308200-133326400	Weak transcription	Ovary	ovary
12	chr3:133308200-133326600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:133308200-133326600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:133308200-133327400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:133308200-133330600	Weak transcription	Gastric	stomach
16	chr3:133308200-133342200	Weak transcription	Brain Substantia Nigra	brain
17	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:133308400-133327400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:133308600-133325000	Weak transcription	Liver	Liver
20	chr3:133308600-133326000	Weak transcription	Fetal Lung	lung
21	chr3:133308600-133326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr3:133308600-133326400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:133308600-133326400	Weak transcription	Small Intestine	intestine
24	chr3:133308600-133327400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr3:133308600-133347600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:133308600-133349200	Weak transcription	Esophagus	oesophagus
27	chr3:133308600-133351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:133308800-133325800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr3:133308800-133325800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:133308800-133326000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr3:133308800-133326000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:133308800-133326400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr3:133308800-133326400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr3:133308800-133326400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr3:133308800-133326400	Weak transcription	Brain Hippocampus Middle	brain
37	chr3:133308800-133326600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:133308800-133326600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr3:133308800-133326600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr3:133308800-133327000	Weak transcription	Brain Anterior Caudate	brain
41	chr3:133308800-133328400	Weak transcription	Lung	lung
42	chr3:133309000-133326600	Weak transcription	Left Ventricle	heart
43	chr3:133309000-133326800	Weak transcription	Brain Germinal Matrix	brain
44	chr3:133309200-133325400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr3:133309200-133326600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr3:133309400-133326600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr3:133310600-133326000	Weak transcription	A549	lung
48	chr3:133310800-133335000	Weak transcription	Aorta	Aorta
49	chr3:133310800-133349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:133314200-133335400	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links