Variant report

Variant	rs10935088
Chromosome Location	chr3:133612078-133612079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133593879..133596730-chr3:133611617..133613170,2	K562	blood:
2	chr3:133604700..133606393-chr3:133610584..133612125,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10212397	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11706007	0.91[ASN][1000 genomes]
rs12492380	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs13325953	0.91[ASN][1000 genomes]
rs1589900	0.91[ASN][1000 genomes]
rs16841102	0.80[YRI][hapmap]
rs2222633	0.91[ASN][1000 genomes]
rs2222634	0.91[ASN][1000 genomes]
rs2370639	0.91[ASN][1000 genomes]
rs3811663	0.92[ASN][1000 genomes]
rs6762758	0.85[ASN][1000 genomes]
rs6787108	0.85[ASN][1000 genomes]
rs7636726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7638839	0.91[ASN][1000 genomes]
rs7641276	0.91[ASN][1000 genomes]
rs7651963	0.91[ASN][1000 genomes]
rs9813363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9815710	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9824250	0.88[ASN][1000 genomes]
rs9824788	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9840311	0.85[ASN][1000 genomes]
rs9844944	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs9852801	0.91[CHB][hapmap]
rs9861470	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9879849	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133596400-133613600	Weak transcription	Gastric	stomach
2	chr3:133601200-133612800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:133601400-133612800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:133607000-133612800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:133609800-133612200	Enhancers	Fetal Muscle Leg	muscle
6	chr3:133609800-133612400	Enhancers	Brain Anterior Caudate	brain
7	chr3:133609800-133613200	Enhancers	Right Ventricle	heart
8	chr3:133609800-133613600	Enhancers	Spleen	Spleen
9	chr3:133610000-133612600	Enhancers	Fetal Brain Female	brain
10	chr3:133610200-133613000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:133610200-133613400	Enhancers	K562	blood
12	chr3:133610200-133614000	Enhancers	Fetal Heart	heart
13	chr3:133610400-133612800	Enhancers	Fetal Brain Male	brain
14	chr3:133610600-133612800	Active TSS	Brain Cingulate Gyrus	brain
15	chr3:133610600-133612800	Genic enhancers	Brain Germinal Matrix	brain
16	chr3:133610600-133613200	Enhancers	Left Ventricle	heart
17	chr3:133610800-133612800	Active TSS	Brain Angular Gyrus	brain
18	chr3:133610800-133613400	Enhancers	Right Atrium	heart
19	chr3:133611200-133612600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:133611600-133612400	Enhancers	Fetal Muscle Trunk	muscle
21	chr3:133611800-133612800	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:133611800-133613000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:133611800-133613000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:133612000-133612200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:133612000-133612200	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr3:133612000-133612600	Enhancers	Ovary	ovary
27	chr3:133612000-133613000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:133612000-133613000	Weak transcription	Pancreas	Pancrea
29	chr3:133612000-133613200	Enhancers	Brain Substantia Nigra	brain

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