Variant report

Variant	rs9815710
Chromosome Location	chr3:133600892-133600893
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133591457..133594104-chr3:133599592..133601842,2	MCF-7	breast:
2	chr3:133595806..133598075-chr3:133598374..133600907,3	K562	blood:
3	chr3:133599032..133602224-chr3:133604113..133606875,3	MCF-7	breast:
4	chr3:133599732..133601773-chr3:133618938..133620509,2	K562	blood:
5	chr3:133600203..133603946-chr3:133604240..133607293,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10212397	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10935088	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11706007	0.87[ASN][1000 genomes]
rs12492380	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13325953	0.87[ASN][1000 genomes]
rs1589900	0.87[ASN][1000 genomes]
rs1880667	0.86[JPT][hapmap]
rs1917781	0.86[JPT][hapmap]
rs2222633	0.87[ASN][1000 genomes]
rs2222634	0.87[ASN][1000 genomes]
rs2370639	0.87[ASN][1000 genomes]
rs3811663	0.88[ASN][1000 genomes]
rs6762758	0.82[ASN][1000 genomes]
rs6787108	0.82[ASN][1000 genomes]
rs7636726	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7638839	0.87[ASN][1000 genomes]
rs7641276	0.87[ASN][1000 genomes]
rs7651963	0.87[ASN][1000 genomes]
rs940898	0.86[JPT][hapmap]
rs9813363	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9819520	1.00[MEX][hapmap]
rs9824250	0.84[ASN][1000 genomes]
rs9824788	0.85[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs9840311	0.82[ASN][1000 genomes]
rs9844944	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9852801	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs9861470	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879849	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133590600-133606600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:133592000-133602000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:133592400-133602800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:133592400-133605800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:133596400-133613600	Weak transcription	Gastric	stomach
6	chr3:133598200-133601400	ZNF genes & repeats	Brain Germinal Matrix	brain
7	chr3:133598600-133602800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:133598800-133610400	Weak transcription	Fetal Brain Male	brain
9	chr3:133599000-133602200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:133599000-133602200	Enhancers	GM12878-XiMat	blood
11	chr3:133599400-133602600	Weak transcription	Left Ventricle	heart
12	chr3:133599400-133602800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr3:133599600-133601800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:133599600-133610600	Weak transcription	Pancreas	Pancrea
15	chr3:133599800-133601000	Weak transcription	Brain Anterior Caudate	brain
16	chr3:133599800-133601200	Weak transcription	Brain Substantia Nigra	brain
17	chr3:133599800-133601600	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:133599800-133603000	Weak transcription	Spleen	Spleen
19	chr3:133599800-133606200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:133600000-133602200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr3:133600000-133603600	Enhancers	K562	blood
22	chr3:133600200-133603600	Enhancers	Stomach Mucosa	stomach
23	chr3:133600400-133601000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr3:133600400-133601400	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr3:133600400-133601600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr3:133600400-133602800	Enhancers	Placenta	Placenta
27	chr3:133600600-133601400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr3:133600800-133601200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:133600800-133602200	ZNF genes & repeats	Fetal Brain Female	brain
30	chr3:133600800-133602400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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