Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133612582..133614993-chr3:133615630..133617842,2	K562	blood:
2	chr3:133613123..133615156-chr3:133615262..133617720,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154917	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1104916	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12492380	0.86[JPT][hapmap]
rs1358020	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1525886	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1880667	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1917780	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1917781	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1949881	0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2692677	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2692680	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2692685	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2715624	0.81[ASN][1000 genomes]
rs2715633	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2887814	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs940900	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9811568	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9813363	0.86[JPT][hapmap]
rs9815710	0.86[JPT][hapmap]
rs9844944	0.85[JPT][hapmap]
rs9861470	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv979784	chr3:133616134-133616835	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133615600-133616400	Enhancers	Pancreas	Pancrea
2	chr3:133616000-133616600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:133616200-133616400	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr3:133616200-133616400	Enhancers	Right Atrium	heart

Quick Search: