Variant report

Variant	rs9819520
Chromosome Location	chr3:133650996-133650997
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12492380	0.90[MEX][hapmap]
rs61465346	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62269123	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9810443	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9813363	0.90[MEX][hapmap]
rs9815710	1.00[MEX][hapmap]
rs9839275	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9839950	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9850167	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133646400-133652800	Weak transcription	Spleen	Spleen
2	chr3:133646800-133658200	Weak transcription	Right Atrium	heart
3	chr3:133647000-133653200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:133647000-133654600	Weak transcription	Right Ventricle	heart
5	chr3:133647000-133661800	Weak transcription	Gastric	stomach
6	chr3:133647400-133661000	Weak transcription	Fetal Thymus	thymus
7	chr3:133647600-133652600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:133647800-133652800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:133647800-133661000	Weak transcription	Lung	lung
10	chr3:133649000-133651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:133649600-133652600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:133649800-133652600	Weak transcription	Stomach Mucosa	stomach
13	chr3:133649800-133658200	Weak transcription	Esophagus	oesophagus
14	chr3:133650200-133662600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:133650600-133652800	Weak transcription	Fetal Intestine Small	intestine
16	chr3:133650800-133651000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:133650800-133651400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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