Variant report

Variant	rs10935114
Chromosome Location	chr3:134177882-134177883
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134177048..134179996-chr3:134183528..134186034,2	MCF-7	breast:
2	chr3:134090280..134093272-chr3:134177192..134180095,2	MCF-7	breast:
3	chr3:134077067..134080470-chr3:134177227..134178995,3	MCF-7	breast:
4	chr3:134147507..134149518-chr3:134176090..134178859,2	MCF-7	breast:
5	chr3:134170227..134173961-chr3:134177457..134180784,3	MCF-7	breast:
6	chr3:134177467..134180385-chr3:134192923..134195791,2	MCF-7	breast:
7	chr3:134177254..134179184-chr3:134182489..134185436,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114019	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1127826	0.90[AFR][1000 genomes]
rs4974482	0.85[AFR][1000 genomes]
rs57033722	0.90[AFR][1000 genomes]
rs73221342	0.90[AFR][1000 genomes]
rs7620040	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs9289474	0.90[AFR][1000 genomes]
rs9837130	0.90[AFR][1000 genomes]
rs9842113	0.80[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9842140	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9845760	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10935114	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs10935114	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs10935114	ANAPC13	cis	Thyroid	GTEx
rs10935114	CEP63	cis	Artery Tibial	GTEx
rs10935114	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs10935114	ANAPC13	cis	Artery Tibial	GTEx

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134166000-134181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:134167200-134181800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:134169000-134183600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:134169200-134178600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:134169200-134180400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:134171000-134178600	Weak transcription	Osteobl	bone
7	chr3:134172600-134178200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:134173000-134181200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:134173200-134180800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:134173200-134181000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:134175000-134180800	Weak transcription	Fetal Kidney	kidney
12	chr3:134176200-134178600	Enhancers	Pancreas	Pancrea
13	chr3:134176200-134182000	Weak transcription	Aorta	Aorta
14	chr3:134176600-134180000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:134176800-134180000	Weak transcription	NHEK	skin
16	chr3:134176800-134180800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:134176800-134180800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:134176800-134180800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:134176800-134182200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:134177000-134178200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:134177000-134178400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:134177000-134178400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:134177000-134178600	Weak transcription	Adipose Nuclei	Adipose
24	chr3:134177000-134179400	Weak transcription	Right Atrium	heart
25	chr3:134177000-134179600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:134177000-134179600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:134177000-134181200	Weak transcription	Fetal Brain Male	brain
28	chr3:134177200-134179400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:134177400-134178400	Weak transcription	NHDF-Ad	bronchial
30	chr3:134177400-134181800	Weak transcription	Fetal Brain Female	brain
31	chr3:134177600-134178000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:134177600-134178200	Enhancers	Fetal Intestine Small	intestine
33	chr3:134177800-134180800	Weak transcription	Fetal Stomach	stomach

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