Variant report

Variant	rs57033722
Chromosome Location	chr3:134277740-134277741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134209724..134212425-chr3:134275808..134277795,2	MCF-7	breast:
2	chr3:134270436..134272100-chr3:134275152..134278242,3	MCF-7	breast:
3	chr3:134270443..134272968-chr3:134275419..134277826,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10935114	0.90[AFR][1000 genomes]
rs1127826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634127	0.89[ASN][1000 genomes]
rs4974482	0.95[AFR][1000 genomes]
rs73221342	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9289474	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9837130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9842140	1.00[AFR][1000 genomes]
rs9845760	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs57033722	ANAPC13	cis	Thyroid	GTEx
rs57033722	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs57033722	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs57033722	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs57033722	ANAPC13	cis	Artery Tibial	GTEx

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134246200-134280800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:134246600-134281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:134250400-134282000	Weak transcription	Stomach Mucosa	stomach
4	chr3:134253200-134280000	Weak transcription	NH-A	brain
5	chr3:134256600-134287200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:134256800-134280800	Weak transcription	Right Ventricle	heart
7	chr3:134267800-134281200	Weak transcription	A549	lung
8	chr3:134269800-134278000	Weak transcription	Fetal Stomach	stomach
9	chr3:134269800-134278400	Weak transcription	Fetal Intestine Small	intestine
10	chr3:134269800-134278600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:134269800-134278600	Weak transcription	Esophagus	oesophagus
12	chr3:134269800-134279400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:134269800-134280800	Weak transcription	Gastric	stomach
14	chr3:134269800-134281800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:134269800-134282800	Weak transcription	NHLF	lung
16	chr3:134269800-134286400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:134269800-134296600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:134270000-134280600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:134270000-134282800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:134270000-134283000	Weak transcription	Small Intestine	intestine
21	chr3:134270000-134286000	Weak transcription	Psoas Muscle	Psoas
22	chr3:134270200-134280800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr3:134270200-134281800	Weak transcription	NHEK	skin
24	chr3:134270400-134278600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:134270400-134279400	Weak transcription	Fetal Lung	lung
26	chr3:134270400-134280800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:134270400-134281000	Weak transcription	Fetal Kidney	kidney
28	chr3:134270600-134285200	Weak transcription	Brain Germinal Matrix	brain
29	chr3:134271200-134278200	Weak transcription	HepG2	liver
30	chr3:134271200-134280800	Weak transcription	Thymus	Thymus
31	chr3:134271200-134282600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:134271200-134284800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:134271400-134278600	Weak transcription	Pancreas	Pancrea
34	chr3:134271400-134280800	Weak transcription	Ovary	ovary
35	chr3:134271400-134282600	Weak transcription	Lung	lung
36	chr3:134271400-134286400	Weak transcription	Spleen	Spleen
37	chr3:134271400-134287800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:134271800-134278400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr3:134271800-134281800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:134272000-134278000	Weak transcription	Brain Substantia Nigra	brain
41	chr3:134272000-134278600	Weak transcription	Colonic Mucosa	Colon
42	chr3:134272000-134278600	Weak transcription	HSMMtube	muscle
43	chr3:134272000-134279600	Weak transcription	Osteobl	bone
44	chr3:134272000-134289800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:134272200-134278600	Weak transcription	Brain Anterior Caudate	brain
46	chr3:134272200-134278600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr3:134272200-134280800	Weak transcription	Fetal Brain Female	brain
48	chr3:134272200-134281800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr3:134272200-134287200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:134272600-134278400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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