Variant report

Variant	rs10936188
Chromosome Location	chr3:159765788-159765789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10513549	1.00[ASN][1000 genomes]
rs11714413	1.00[ASN][1000 genomes]
rs12106808	0.85[EUR][1000 genomes]
rs12107002	0.90[EUR][1000 genomes]
rs12107028	0.85[EUR][1000 genomes]
rs12107046	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12107357	0.90[EUR][1000 genomes]
rs12107558	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12107783	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12486879	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12492873	0.90[EUR][1000 genomes]
rs12496326	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16831052	0.90[EUR][1000 genomes]
rs16831059	0.81[EUR][1000 genomes]
rs1818023	0.90[EUR][1000 genomes]
rs7620652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638274	1.00[ASN][1000 genomes]
rs7638469	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159757200-159766600	Weak transcription	Pancreas	Pancrea
2	chr3:159762200-159765800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:159762200-159765800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:159765600-159766200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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