Variant report

Variant	rs16831052
Chromosome Location	chr3:159767453-159767454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10936188	0.90[EUR][1000 genomes]
rs12107002	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12107357	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486839	0.97[ASN][1000 genomes]
rs12486879	0.84[EUR][1000 genomes]
rs12487209	0.97[ASN][1000 genomes]
rs12489962	0.82[EUR][1000 genomes]
rs12492873	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12496326	0.84[EUR][1000 genomes]
rs12637246	0.81[AMR][1000 genomes]
rs16831059	0.84[EUR][1000 genomes]
rs16831062	0.82[EUR][1000 genomes]
rs1818023	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60235173	0.82[EUR][1000 genomes]
rs6789027	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs7620652	0.90[EUR][1000 genomes]
rs7620832	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159766200-159767600	Enhancers	Aorta	Aorta
2	chr3:159766400-159770200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:159766400-159772800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:159766600-159767600	Enhancers	Pancreas	Pancrea
5	chr3:159766600-159767600	Enhancers	Stomach Smooth Muscle	stomach
6	chr3:159767000-159767600	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:159767200-159767600	Enhancers	Fetal Heart	heart
8	chr3:159767200-159768000	Enhancers	Colon Smooth Muscle	Colon
9	chr3:159767200-159768000	Enhancers	Gastric	stomach
10	chr3:159767400-159767600	Enhancers	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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