Variant report
| Variant | rs10938075 |
|---|---|
| Chromosome Location | chr4:74341811-74341812 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RASSF6-2 | chr4:74340906-74342180 | expReg_chr4_3292_- |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1158101 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11939341 | 0.80[ASN][1000 genomes] |
| rs12510870 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs13107306 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13124940 | 0.81[ASN][1000 genomes] |
| rs13150405 | 0.83[ASN][1000 genomes] |
| rs16849461 | 0.92[ASN][1000 genomes] |
| rs16849484 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs16849508 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1894293 | 0.81[ASN][1000 genomes] |
| rs2071098 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34400902 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35858007 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3765639 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs66501353 | 0.84[EUR][1000 genomes] |
| rs6852772 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs72649104 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3430875 | chr4:74243646-74420354 | Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
