Variant report

Variant	rs12510870
Chromosome Location	chr4:74358277-74358278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10518115	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10518116	0.90[CEU][hapmap]
rs10938075	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1158101	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13107306	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1358592	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs1569204	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs16849484	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16849508	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2071098	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34400902	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35858007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765639	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4694170	0.80[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66501353	0.86[EUR][1000 genomes]
rs6852772	0.90[CEU][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72649104	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74353000-74364800	Weak transcription	Fetal Intestine Small	intestine
2	chr4:74354000-74365600	Weak transcription	Fetal Intestine Large	intestine
3	chr4:74358000-74358600	Strong transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links